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Animal board invited review: genetic possibilities to reduce enteric methane emissions from ruminants
- N. K. Pickering, V. H. Oddy, J. Basarab, K. Cammack, B. Hayes, R. S. Hegarty, J. Lassen, J. C. McEwan, S. Miller, C. S. Pinares-Patiño, Y. de Haas
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Measuring and mitigating methane (CH4) emissions from livestock is of increasing importance for the environment and for policy making. Potentially, the most sustainable way of reducing enteric CH4 emission from ruminants is through the estimation of genomic breeding values to facilitate genetic selection. There is potential for adopting genetic selection and in the future genomic selection, for reduced CH4 emissions from ruminants. From this review it has been observed that both CH4 emissions and production (g/day) are a heritable and repeatable trait. CH4 emissions are strongly related to feed intake both in the short term (minutes to several hours) and over the medium term (days). When measured over the medium term, CH4 yield (MY, g CH4/kg dry matter intake) is a heritable and repeatable trait albeit with less genetic variation than for CH4 emissions. CH4 emissions of individual animals are moderately repeatable across diets, and across feeding levels, when measured in respiration chambers. Repeatability is lower when short term measurements are used, possibly due to variation in time and amount of feed ingested prior to the measurement. However, while repeated measurements add value; it is preferable the measures be separated by at least 3 to 14 days. This temporal separation of measurements needs to be investigated further. Given the above issue can be resolved, short term (over minutes to hours) measurements of CH4 emissions show promise, especially on systems where animals are fed ad libitum and frequency of meals is high. However, we believe that for short-term measurements to be useful for genetic evaluation, a number (between 3 and 20) of measurements will be required over an extended period of time (weeks to months). There are opportunities for using short-term measurements in standardised feeding situations such as breath ‘sniffers’ attached to milking parlours or total mixed ration feeding bins, to measure CH4. Genomic selection has the potential to reduce both CH4 emissions and MY, but measurements on thousands of individuals will be required. This includes the need for combined resources across countries in an international effort, emphasising the need to acknowledge the impact of animal and production systems on measurement of the CH4 trait during design of experiments.
Heritability estimates of methane emissions from sheep
- C. S. Pinares-Patiño, S. M. Hickey, E. A. Young, K. G. Dodds, S. MacLean, G. Molano, E. Sandoval, H. Kjestrup, R. Harland, C. Hunt, N. K. Pickering, J. C. McEwan
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The objective of this study was to determine the genetic parameters of methane (CH4) emissions and their genetic correlations with key production traits. The trial measured the CH4 emissions, at 5-min intervals, from 1225 sheep placed in respiration chambers for 2 days, with repeat measurements 2 weeks later for another 2 days. They were fed in the chambers, based on live weight, a pelleted lucerne ration at 2.0 times estimated maintenance requirements. Methane outputs were calculated for g CH4/day and g CH4/kg dry matter intake (DMI) for each of the 4 days. Single trait models were used to obtain estimates of heritability and repeatability. Heritability of g CH4/day was 0.29 ± 0.05, and for g CH4/kg DMI 0.13 ± 0.03. Repeatability between measurements 14 days apart were 0.55 ± 0.02 and 0.26 ± 0.02, for the two traits. The genetic and phenotypic correlations of CH4 outputs with various production traits (weaning weight, live weight at 8 months of age, dag score, muscle depth and fleece weight at 12 months of age) measured in the first year of life, were estimated using bivariate models. With the exception of fleece weight, correlations were weak and not significantly different from zero for the g CH4/kg DMI trait. For fleece weight the phenotypic and genetic correlation estimates were −0.08 ± 0.03 and −0.32 ± 0.11 suggesting a low economically favourable relationship. These results indicate that there is genetic variation between animals for CH4 emission traits even after adjustment for feed intake and that these traits are repeatable. Current work includes the establishment of selection lines from these animals to investigate the physiological, microbial and anatomical changes, coupled with investigations into shorter and alternative CH4 emission measurement and breeding value estimation techniques; including genomic selection.
Effect of release rate of the SF6 tracer on methane emission estimates based on ruminal and breath gas samples
- C. Martin, J. Koolaard, Y. Rochette, H. Clark, J. P. Jouany, C. S. Pinares-Patiño
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The release rate (RR) of sulphur hexafluoride (SF6) gas from permeation tube in the rumen appears to be positively related with methane (CH4) emissions calculated using the SF6 tracer technique. Gas samples of breath and ruminal headspace were collected simultaneously in order to evaluate the hypothesis that transactions of SF6 in the rumen are the source for this relationship. Six non-lactating dairy cows fitted with rumen cannulae were subdivided into two groups and randomly assigned to a two-period crossover design to permeation tubes with low RR (LRR = 1.577 mg/day) or two-times higher RR (HRR = 3.147 mg/day) RR. The cows were fed limited amounts of maize silage (80% ad libitum) split into two meals (40% at 0800 h and 60% at 1600 h). Each period consisted of 3-day gas sampling. Immediately before the morning feed and then each hour over 8 h, ruminal gas samples (50 ml) were withdrawn through the cannula fitted with stoppers to prevent opening. Simultaneously, 8-h integrated breath gas samples were collected over the same period. Ratios of concentration of CH4/SF6, CO2/SF6 and CO2/CH4 and emission estimates of CH4 and CO2 were calculated for each sample source using the SF6 tracer technique principles. The LRR treatment yielded higher (P < 0.001) ruminal CH4/SF6 (by 1.79 times) and CO2/SF6 (by 1.90 times) ratios than the HRR treatment; however, these differences were lower than the 2.0 times difference expected from the RR between the LRR and HRR. Consequently, the LRR treatment was associated with lower (P < 0.01) ruminal emissions of CH4 over the 8-h collection period than with the HRR treatment (+11%), a difference also confirmed by the breath samples (+11%). RR treatments did not differ (P = 0.53) in ruminal or breath CO2 emissions; however, our results confirm that the SF6 tracer seems inappropriate for CO2 emissions estimation in ruminants. Irrespective of the RR treatment, breath samples yielded 8% to 9% higher CH4 emission estimates than the ruminal samples (P = 0.01). The relationship between rumen and breath sources for CH4 emissions was better for LRR than for HRR treatment, suggesting that tracer performance decreases with the highest RR of SF6 tested in our study (3.1 mg/day). A hypothesis is discussed with regard to the mechanism responsible for the relationship between RR and CH4 emission estimates. The use of permeation tubes with small range in RR is recommended in animal experiments to decrease variability in CH4 emission estimates using the SF6 tracer technique.
Measurement of methane emission from sheep by the sulphur hexafluoride tracer technique and by the calorimetric chamber: failure and success
- C. S. Pinares-Patiño, C. W. Holmes, K. R. Lassey, M. J. Ulyatt
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The aim of this study was to evaluate the sulphur hexafluoride (SF6) tracer technique for methane (CH4) emission measurement in sheep. Ten cryptorchid Romney sheep were involved in two indoor trials (T1 and T2), where daily CH4 emissions were individually measured both by the SF6 tracer (‘tracer CH4’) and by the indirect calorimetry chamber (‘chamber CH4’) techniques while fed on lucerne hay at 1.2 times maintenance requirements. Separate sets of permeation tubes with pre-calibrated permeation rates (‘pre-calibrated PRs’) were used in the two trials (for tracer CH4) and at the time of T1 and T2 these tubes had been deployed in the rumen for 250 and 30 days, respectively. The tracer CH4 measurements were carried out for 2 (T1) and 5 (T2) days in digestibility crates housed within a building (T1) or a well-ventilated covered yard (T2). Sheep were transferred to calorimetry chambers for 3 days acclimatisation, followed by measurement of CH4 emission for 7 (T1) and 3 (T2) days. In T1 samples from the chamber, outflow and inflow (collected over ∼22 h) were analysed for CH4 and SF6 concentrations using the tracer protocol. Thus, PRs of SF6 at the time of the trials (‘calculated PRs’) could be inferred and the corresponding CH4 emissions are then calculated using either the pre-calibrated PR or calculated PR. Permeation tubes were recovered at the end of the animal trials and their ‘post-recovery PR’ determined. In trial T1, the tracer CH4 estimates (based on the pre-calibrated PR) were much higher and more variable than the chamber CH4 values. In this trial, the calculated PR and the post-recovery PR were similar from each other but smaller than the pre-calibrated PR, and when the calculated PR was used in place of the pre-calibrated PR the CH4 emission estimates agreed well with the chamber CH4 values. This suggested that the discrepancy was due to a declining PR during the long deployment time of the tubes in T1, an observation reported elsewhere. When the long intra-ruminal deployment was avoided in T2, good agreement between the techniques for CH4 emission measurement was observed.
Methane emission by alpaca and sheep fed on lucerne hay or grazed on pastures of perennial ryegrass/white clover or birdsfoot trefoil
- C. S. PINARES-PATIÑO, M. J. ULYATT, G. C. WAGHORN, K. R. LASSEY, T. N. BARRY, C. W. HOLMES, D. E. JOHNSON
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- The Journal of Agricultural Science / Volume 140 / Issue 2 / March 2003
- Published online by Cambridge University Press:
- 20 May 2003, pp. 215-226
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Based on the knowledge that alpaca (Lama pacos) have a lower fractional outflow rate of feed particles (particulate FOR) from their forestomach than sheep (San Martin 1987), the current study measured methane (CH4) production and other digestion parameters in these species in three successive experiments (1, 2 and 3): Experiment 1, lucerne hay fed indoors; Experiment 2, grazed on perennial ryegrass/white clover pasture (PRG/WC); and Experiment 3, grazed on birdsfoot trefoil (Lotus corniculatus) pasture (Lotus). Six male alpaca and six castrated Romney sheep were simultaneously and successively fed on the forages either ad libitum or at generous herbage allowances (grazing). CH4 production (g/day) (using the sulphur hexafluoride tracer technique), voluntary feed intake (VFI), diet quality, and protozoa counts and volatile fatty acid concentrations in samples of forestomach contents were determined. In addition, feed digestibility, energy and nitrogen (N) balances and microbial N supply from the forestomach (using purine derivatives excretion) were measured in Experiment 1.
Diets selected by alpaca were of lower quality than those selected by sheep, and the voluntary gross energy intakes (GEI, MJ) per kg of liveweight0·75 were consistently lower (P<0·001) for the alpaca than for the sheep (0·74 v. 1·36, 0·61 v. 1·32 and 0·77 v. 2·53 on lucerne hay, PRG/WC and Lotus, respectively). Alpaca and sheep did not differ (P>0·05) in their CH4 yields (% GEI) when fed on lucerne hay (5·1 v. 4·7), but alpaca had a higher CH4 yield when fed on PRG/WC (9·4 v. 7·5, P<0·05) and Lotus (6·4 v. 2·7, P<0·001). When grazing on Lotus, the sheep had very high protozoa counts in their forestomach contents, compared with those with the other forages and those in the alpaca. On lucerne hay and Lotus, but not on PRG/WC, the alpaca had higher (P<0·01) acetate/propionate ratio in their forestomach fluid than sheep. When fed on lucerne hay, alpaca and sheep did not differ (P>0·05) in diet N partition or microbial N yield, but alpaca had higher (P<0·05) neutral detergent fibre digestibility (0·478 v. 0·461) and lower (P<0·01) urinary energy losses (5·2 v. 5·8 % GEI) than sheep. It is suggested that differences between these species in forestomach particulate FOR might have been the underlying physiological mechanism responsible for the differences in CH4 yield, although the between-species differences in VFI and diet quality also had a major effect on it.
Persistence of differences between sheep in methane emission under generous grazing conditions
- C. S. PINARES-PATIÑO, M. J. ULYATT, K. R. LASSEY, T. N. BARRY, C. W. HOLMES
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- The Journal of Agricultural Science / Volume 140 / Issue 2 / March 2003
- Published online by Cambridge University Press:
- 20 May 2003, pp. 227-233
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Four low and four high methane (CH4) emitters were selected from a flock of 20 Romney sheep on the basis of CH4 production rates per unit of intake, measured at grazing using the sulphur hexafluoride (SF6) tracer technique. Methane emissions from these sheep were monitored at grazing for four periods (P): October, November, January and February 1999/2000. All measurements were carried out on perennial ryegrass/white clover pasture under generous herbage allowance, and the sheep were maintained on similar pastures during non-measurement periods. The tracer technique was used for all the CH4 measurements and feed DM intake was calculated from total faecal collection and estimated DM digestibility. Data for liveweight (LW), gross energy intake (GEI) and CH4 emission were analysed using split-plot analysis of variance. In addition, a between-period rank order correlation analysis was carried out for CH4 emission data.
Low CH4 emitters were heavier (P<0·05) than the high emitters in all the periods, but they did not differ (P<0·05) in their gross energy intakes (GEI: MJ/kg LW0·75). Low and high CH4 emitters consistently maintained their initial rankings in CH4 yield (% GEI) throughout the subsequent periods and the correlation analysis of rank order for CH4 yield showed strong between-period correlation coefficients, although this was weaker in the last period. It is suggested that feeding conditions that maximize feed intake (e.g. generous allowance of good quality pasture under grazing) favour the expression and persistence of between-sheep differences in CH4 yield.
Rumen function and digestion parameters associated with differences between sheep in methane emissions when fed chaffed lucerne hay
- C. S. PINARES-PATIÑO, M. J. ULYATT, K. R. LASSEY, T. N. BARRY, C. W. HOLMES
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- The Journal of Agricultural Science / Volume 140 / Issue 2 / March 2003
- Published online by Cambridge University Press:
- 20 May 2003, pp. 205-214
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An indoor experiment involving 10 rumen-cannulated Romney sheep was conducted in May and June 1998 at AgResearch Grasslands, Palmerston North, New Zealand, under restricted feeding conditions, in order to test the hypothesis that animal factors, in particular rumen fractional outflow rate (FOR) and rumen volume, have an influence on the between-sheep variation in methane (CH4) emission. Sheep were fed 2-hourly on chaffed lucerne hay. Following an acclimatization period of 21 days, the experiment lasted 16 days. Energy and nitrogen (N) balances were measured on days 1–6. Cr-EDTA marker was continuously infused into the rumen from day 9 to 16, and rumen contents emptied and sampled on days 13 and 16. Particulate and fluid FOR were estimated using feed lignin and Cr-EDTA, respectively. Daily CH4 production was measured by the sulphur hexafluoride tracer technique on days 2, 5, 6, 12 and 15 of the experiment.
CH4 production (g/day) was positively correlated with the pool size of organic matter (OM) in the rumen (OM pool, g) (r=0·84, P=0·002), OM intake (OMI, g/day) (r=0·67, P=0·04), and the rumen fill (g, wet digesta) (r=0·76, P=0·01). Multiple regression analysis showed that CH4 production was best predicted (R2=0·88) as a function of OM pool and the molar % of butyrate; however, OM pool alone accounted for a large proportion (R2=0·71) of the variation in CH4 production.
CH4 yield (% gross energy intake, % GEI) was negatively correlated with the particulate FOR (%/h) (r=−0·75, P=0·01) and buffering capacity of rumen fluid (mmol HCl) (r=−0·72, P=0·02), but positively correlated with the digestibility of cellulose (r=0·66, P=0·04). Multiple regression analysis showed that CH4 yield was best predicted as a function of particulate FOR, OMI (g/kg liveweight0·75) and the molar % of butyrate (R2=0·88). Particulate FOR alone explained a large proportion (R2=0·57) of the variation in CH4 yield. Particulate FOR was negatively correlated with rumen fill (r=−0·69, P=0·03) and digestibility of cellulose (r=−0·65, P=0·04).
These results suggest that sheep with lower rumen particulate FOR (i.e. longer rumen retention times) had larger rumen fills and higher fibre digestibilities and CH4 yields. If rumen particulate FOR is to be used as a tool for CH4 mitigation, the repeatability of its relationship to CH4 emission must be assessed, preferably under grazing conditions.